IL_4V6P_075

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_075 not in the Motif Atlas

Geometric match to IL_5J7L_250

Geometric discrepancy: 0.1596

The information below is about IL_5J7L_250

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V6P|1|BB|G|188
4V6P|1|BB|G|189
4V6P|1|BB|A|190
4V6P|1|BB|A|191
4V6P|1|BB|C|192
4V6P|1|BB|U|193
4V6P|1|BB|G|194
*
4V6P|1|BB|C|201
4V6P|1|BB|U|202
4V6P|1|BB|A|203
4V6P|1|BB|A|204
4V6P|1|BB|G|205
4V6P|1|BB|U|206
4V6P|1|BB|A|207
4V6P|1|BB|C|208

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28