3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CCUGAAUC*GUGAG
Length
13 nucleotides
Bulged bases
4V6P|1|BB|G|277
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6P_078 not in the Motif Atlas
Homologous match to IL_5J7L_253
Geometric discrepancy: 0.4049
The information below is about IL_5J7L_253
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_77870.1
Basepair signature
cWW-L-R-L-tHS-L-cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

4V6P|1|BB|C|274
4V6P|1|BB|C|275
4V6P|1|BB|U|276
4V6P|1|BB|G|277
4V6P|1|BB|A|278
4V6P|1|BB|A|279
4V6P|1|BB|U|280
4V6P|1|BB|C|281
*
4V6P|1|BB|G|359
4V6P|1|BB|U|360
4V6P|1|BB|G|361
4V6P|1|BB|A|362
4V6P|1|BB|G|363

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1447 s
Application loaded.