IL_4V6P_080

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

4V6P|1|BB|A|504, 4V6P|1|BB|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_080 not in the Motif Atlas

Homologous match to IL_5J7L_255

Geometric discrepancy: 0.17

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

4V6P|1|BB|G|481
4V6P|1|BB|A|482
4V6P|1|BB|A|483
4V6P|1|BB|C|484
*
4V6P|1|BB|G|496
4V6P|1|BB|A|497
4V6P|1|BB|G|498
4V6P|1|BB|U|499
4V6P|1|BB|G|500
4V6P|1|BB|A|501
4V6P|1|BB|A|502
4V6P|1|BB|A|503
4V6P|1|BB|A|504
4V6P|1|BB|A|505
4V6P|1|BB|G|506
4V6P|1|BB|A|507
4V6P|1|BB|A|508
4V6P|1|BB|C|509

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BU

50S ribosomal protein L22

Chain BW

50S ribosomal protein L24