IL_4V6P_081

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_081 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.2579

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

4V6P|1|BB|G|536
4V6P|1|BB|G|537
4V6P|1|BB|A|538
4V6P|1|BB|G|539
*
4V6P|1|BB|U|554
4V6P|1|BB|G|555
4V6P|1|BB|A|556
4V6P|1|BB|C|557

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20