IL_4V6P_089

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4V6P|1|BB|G|776, 4V6P|1|BB|A|788, 4V6P|1|BB|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_089 not in the Motif Atlas

Geometric match to IL_7RQB_023

Geometric discrepancy: 0.2663

The information below is about IL_7RQB_023

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_90991.6

Basepair signature

cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6P|1|BB|G|775
4V6P|1|BB|G|776
4V6P|1|BB|G|777
*
4V6P|1|BB|C|787
4V6P|1|BB|A|788
4V6P|1|BB|A|789
4V6P|1|BB|U|790
4V6P|1|BB|C|791

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BU

50S ribosomal protein L22