IL_4V6P_094

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAGCACU*AAACUGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|G|862
4V6P|1|BB|A|863
4V6P|1|BB|G|864
4V6P|1|BB|C|865
4V6P|1|BB|A|866
4V6P|1|BB|C|867
4V6P|1|BB|U|868
*
4V6P|1|BB|A|909
4V6P|1|BB|A|910
4V6P|1|BB|A|911
4V6P|1|BB|C|912
4V6P|1|BB|U|913
4V6P|1|BB|G|914
4V6P|1|BB|C|915

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BO

50S ribosomal protein L16

Chain BY

50S ribosomal protein L27