IL_4V6P_096
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- GCAAG*CAACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6P_096 not in the Motif Atlas
- Homologous match to IL_5J7L_274
- Geometric discrepancy: 0.5474
- The information below is about IL_5J7L_274
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
4V6P|1|BB|G|875
4V6P|1|BB|C|876
4V6P|1|BB|A|877
4V6P|1|BB|A|878
4V6P|1|BB|G|879
*
4V6P|1|BB|C|898
4V6P|1|BB|A|899
4V6P|1|BB|A|900
4V6P|1|BB|C|901
4V6P|1|BB|C|902
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain AB
- Transfer RNA; tRNA
- Chain BO
- 50S ribosomal protein L16
Coloring options: