IL_4V6P_098

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CGCCA*UGCG

Length

9 nucleotides

Bulged bases

4V6P|1|BB|C|995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_098 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2609

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V6P|1|BB|C|992
4V6P|1|BB|G|993
4V6P|1|BB|C|994
4V6P|1|BB|C|995
4V6P|1|BB|A|996
*
4V6P|1|BB|U|1159
4V6P|1|BB|G|1160
4V6P|1|BB|C|1161
4V6P|1|BB|G|1162

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L30

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20

Chain BT

50S ribosomal protein L21