IL_4V6P_102

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

4V6P|1|BB|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_102 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.3355

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

4V6P|1|BB|U|1018
4V6P|1|BB|U|1019
4V6P|1|BB|A|1020
4V6P|1|BB|A|1021
4V6P|1|BB|G|1022
4V6P|1|BB|U|1023
4V6P|1|BB|G|1024
*
4V6P|1|BB|C|1140
4V6P|1|BB|U|1141
4V6P|1|BB|A|1142
4V6P|1|BB|A|1143
4V6P|1|BB|A|1144

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BL

50S ribosomal protein L13