3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CUAUGU*ACAAAUG
Length
13 nucleotides
Bulged bases
4V6P|1|BB|U|1554
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V6P|1|BB|C|1437
4V6P|1|BB|U|1438
4V6P|1|BB|A|1439
4V6P|1|BB|U|1440
4V6P|1|BB|G|1441
4V6P|1|BB|U|1442
*
4V6P|1|BB|A|1549
4V6P|1|BB|C|1550
4V6P|1|BB|A|1551
4V6P|1|BB|A|1552
4V6P|1|BB|A|1553
4V6P|1|BB|U|1554
4V6P|1|BB|G|1555

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.211 s
Application loaded.