IL_4V6P_144

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

4V6P|1|BB|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_144 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.2654

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V6P|1|BB|U|2081
4V6P|1|BB|A|2082
4V6P|1|BB|G|2083
*
4V6P|1|BB|U|2236
4V6P|1|BB|G|2237
4V6P|1|BB|G|2238
4V6P|1|BB|G|2239

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2

Chain BZ

50S ribosomal protein L28