IL_4V6P_148

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GUGUAGGAUAG*CCC

Length

14 nucleotides

Bulged bases

4V6P|1|BB|U|2111, 4V6P|1|BB|G|2112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|G|2110
4V6P|1|BB|U|2111
4V6P|1|BB|G|2112
4V6P|1|BB|U|2113
4V6P|1|BB|A|2114
4V6P|1|BB|G|2115
4V6P|1|BB|G|2116
4V6P|1|BB|A|2117
4V6P|1|BB|U|2118
4V6P|1|BB|A|2119
4V6P|1|BB|G|2120
*
4V6P|1|BB|C|2177
4V6P|1|BB|C|2178
4V6P|1|BB|C|2179

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L1