IL_4V6P_152

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UUG*UG

Length

5 nucleotides

Bulged bases

4V6P|1|BB|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_152 not in the Motif Atlas

Geometric match to IL_6UFH_004

Geometric discrepancy: 0.3298

The information below is about IL_6UFH_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V6P|1|BB|U|2202
4V6P|1|BB|U|2203
4V6P|1|BB|G|2204
*
4V6P|1|BB|U|2220
4V6P|1|BB|G|2221

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28