IL_4V6P_156

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_156 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1874

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V6P|1|BB|C|2466
4V6P|1|BB|C|2467
4V6P|1|BB|A|2468
4V6P|1|BB|A|2469
4V6P|1|BB|G|2470
*
4V6P|1|BB|C|2480
4V6P|1|BB|G|2481
4V6P|1|BB|A|2482
4V6P|1|BB|C|2483
4V6P|1|BB|G|2484

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain B7

50S ribosomal protein L36

Chain BO

50S ribosomal protein L16