3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
CG*CAG
Length
5 nucleotides
Bulged bases
4V6P|1|BB|A|2602
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6P_161 not in the Motif Atlas
Geometric match to IL_6WPI_001
Geometric discrepancy: 0.383
The information below is about IL_6WPI_001
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

4V6P|1|BB|C|2591
4V6P|1|BB|G|2592
*
4V6P|1|BB|C|2601
4V6P|1|BB|A|2602
4V6P|1|BB|G|2603

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain AB
Transfer RNA; tRNA
Chain BD
50S ribosomal protein L2

Coloring options:


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