IL_4V6P_177

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4V6P|1|AA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|AA|U|409
4V6P|1|AA|G|410
4V6P|1|AA|A|411
4V6P|1|AA|A|412
4V6P|1|AA|G|413
4V6P|1|AA|A|414
4V6P|1|AA|A|415
4V6P|1|AA|G|416
*
4V6P|1|AA|U|427
4V6P|1|AA|G|428
4V6P|1|AA|U|429
4V6P|1|AA|A|430
4V6P|1|AA|A|431
4V6P|1|AA|A|432
4V6P|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4