3D structure

PDB id
4V6P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
13.5 Å

Loop

Sequence
GUG*CGU
Length
6 nucleotides
Bulged bases
None detected
QA status
Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6P_181 not in the Motif Atlas
Geometric match to IL_1Z7F_005
Geometric discrepancy: 0.2453
The information below is about IL_1Z7F_005
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

4V6P|1|AA|G|836
4V6P|1|AA|U|837
4V6P|1|AA|G|838
*
4V6P|1|AA|C|848
4V6P|1|AA|G|849
4V6P|1|AA|U|850

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AE
30S ribosomal protein S2
Chain AI
30S ribosomal protein S6
Chain AU
30S ribosomal protein S18

Coloring options:


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