IL_4V6P_185
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- UGCAUGGC*GUCAUCAUG
- Length
- 17 nucleotides
- Bulged bases
- 4V6P|1|AA|C|1054, 4V6P|1|AA|A|1201
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6P_185 not in the Motif Atlas
- Geometric match to IL_8C3A_505
- Geometric discrepancy: 0.318
- The information below is about IL_8C3A_505
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06463.1
- Basepair signature
- cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V6P|1|AA|U|1052
4V6P|1|AA|G|1053
4V6P|1|AA|C|1054
4V6P|1|AA|A|1055
4V6P|1|AA|U|1056
4V6P|1|AA|G|1057
4V6P|1|AA|G|1058
4V6P|1|AA|C|1059
*
4V6P|1|AA|G|1198
4V6P|1|AA|U|1199
4V6P|1|AA|C|1200
4V6P|1|AA|A|1201
4V6P|1|AA|U|1202
4V6P|1|AA|C|1203
4V6P|1|AA|A|1204
4V6P|1|AA|U|1205
4V6P|1|AA|G|1206
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- Transfer RNA; tRNA
- Chain AC
- mRNA
- Chain AF
- 30S ribosomal protein S3
- Chain AM
- 30S ribosomal protein S10
- Chain AQ
- 30S ribosomal protein S14
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