IL_4V6P_196

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

4V6P|1|BB|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6P_196 not in the Motif Atlas

Homologous match to IL_9DFE_045

Geometric discrepancy: 0.5322

The information below is about IL_9DFE_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V6P|1|BB|G|1202
4V6P|1|BB|U|1203
4V6P|1|BB|A|1204
4V6P|1|BB|A|1205
4V6P|1|BB|G|1206
*
4V6P|1|BB|U|1240
4V6P|1|BB|A|1241
4V6P|1|BB|U|1242
4V6P|1|BB|C|1243

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15