IL_4V6P_203

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAAGGUUAAUUGAUG*UUGAUCGAAGCCC

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|G|1846
4V6P|1|BB|A|1847
4V6P|1|BB|A|1848
4V6P|1|BB|G|1849
4V6P|1|BB|G|1850
4V6P|1|BB|U|1851
4V6P|1|BB|U|1852
4V6P|1|BB|A|1853
4V6P|1|BB|A|1854
4V6P|1|BB|U|1855
4V6P|1|BB|U|1856
4V6P|1|BB|G|1857
4V6P|1|BB|A|1858
4V6P|1|BB|U|1859
4V6P|1|BB|G|1860
*
4V6P|1|BB|U|1882
4V6P|1|BB|U|1883
4V6P|1|BB|G|1884
4V6P|1|BB|A|1885
4V6P|1|BB|U|1886
4V6P|1|BB|C|1887
4V6P|1|BB|G|1888
4V6P|1|BB|A|1889
4V6P|1|BB|A|1890
4V6P|1|BB|G|1891
4V6P|1|BB|C|1892
4V6P|1|BB|C|1893
4V6P|1|BB|C|1894

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AD

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1

Chain BD

50S ribosomal protein L2

Chain BI

50S ribosomal protein L9