IL_4V6P_227

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

4V6P|1|BB|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|C|1043
4V6P|1|BB|C|1044
4V6P|1|BB|C|1045
4V6P|1|BB|A|1046
4V6P|1|BB|G|1047
4V6P|1|BB|A|1048
4V6P|1|BB|C|1049
4V6P|1|BB|A|1050
4V6P|1|BB|G|1051
4V6P|1|BB|C|1052
*
4V6P|1|BB|G|1107
4V6P|1|BB|U|1108
4V6P|1|BB|C|1109
4V6P|1|BB|G|1110
4V6P|1|BB|A|1111
4V6P|1|BB|G|1112

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L10

Chain BK

50S ribosomal protein L11