IL_4V6Q_002

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAG*CAUG

Length

7 nucleotides

Bulged bases

4V6Q|1|AA|A|397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_002 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.249

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V6Q|1|AA|C|43
4V6Q|1|AA|A|44
4V6Q|1|AA|G|45
*
4V6Q|1|AA|C|396
4V6Q|1|AA|A|397
4V6Q|1|AA|U|398
4V6Q|1|AA|G|399

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AS

30S ribosomal protein S16