IL_4V6Q_022
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- GGAGG*CGUUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6Q_022 not in the Motif Atlas
- Homologous match to IL_5J7L_022
- Geometric discrepancy: 0.208
- The information below is about IL_5J7L_022
- Detailed Annotation
- tSH-tHW-tWW
- Broad Annotation
- No text annotation
- Motif group
- IL_88269.4
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V6Q|1|AA|G|446
4V6Q|1|AA|G|447
4V6Q|1|AA|A|448
4V6Q|1|AA|G|449
4V6Q|1|AA|G|450
*
4V6Q|1|AA|C|483
4V6Q|1|AA|G|484
4V6Q|1|AA|U|485
4V6Q|1|AA|U|486
4V6Q|1|AA|A|487
4V6Q|1|AA|C|488
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AG
- 30S ribosomal protein S4
- Chain AS
- 30S ribosomal protein S16
Coloring options: