3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CGUAAAG*CG
Length
9 nucleotides
Bulged bases
4V6Q|1|AA|A|572
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6Q_028 not in the Motif Atlas
Homologous match to IL_5J7L_026
Geometric discrepancy: 0.2115
The information below is about IL_5J7L_026
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_38186.6
Basepair signature
cWW-L-cWW-L-L-R
Number of instances in this motif group
4

Unit IDs

4V6Q|1|AA|C|569
4V6Q|1|AA|G|570
4V6Q|1|AA|U|571
4V6Q|1|AA|A|572
4V6Q|1|AA|A|573
4V6Q|1|AA|A|574
4V6Q|1|AA|G|575
*
4V6Q|1|AA|C|880
4V6Q|1|AA|G|881

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AH
30S ribosomal protein S5
Chain AO
30S ribosomal protein S12
Chain AT
30S ribosomal protein S17

Coloring options:


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