IL_4V6Q_032

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

4V6Q|1|AA|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|AA|U|605
4V6Q|1|AA|G|606
4V6Q|1|AA|A|607
4V6Q|1|AA|A|608
4V6Q|1|AA|A|609
4V6Q|1|AA|U|610
4V6Q|1|AA|C|611
4V6Q|1|AA|C|612
*
4V6Q|1|AA|G|628
4V6Q|1|AA|A|629
4V6Q|1|AA|A|630
4V6Q|1|AA|C|631
4V6Q|1|AA|U|632
4V6Q|1|AA|G|633

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S4

Chain AS

30S ribosomal protein S16

Chain AT

30S ribosomal protein S17