IL_4V6Q_039

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GCAAAC*GGUAGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_039 not in the Motif Atlas

Geometric match to IL_8ZA4_001

Geometric discrepancy: 0.2989

The information below is about IL_8ZA4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6Q|1|AA|G|778
4V6Q|1|AA|C|779
4V6Q|1|AA|A|780
4V6Q|1|AA|A|781
4V6Q|1|AA|A|782
4V6Q|1|AA|C|783
*
4V6Q|1|AA|G|799
4V6Q|1|AA|G|800
4V6Q|1|AA|U|801
4V6Q|1|AA|A|802
4V6Q|1|AA|G|803
4V6Q|1|AA|U|804

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S11

Chain AX

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA