IL_4V6Q_044

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGU*ACAC

Length

7 nucleotides

Bulged bases

4V6Q|1|AA|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_044 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.2853

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_08770.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

4V6Q|1|AA|G|953
4V6Q|1|AA|G|954
4V6Q|1|AA|U|955
*
4V6Q|1|AA|A|1225
4V6Q|1|AA|C|1226
4V6Q|1|AA|A|1227
4V6Q|1|AA|C|1228

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain AP

30S ribosomal protein S13

Chain AV

30S ribosomal protein S19