IL_4V6Q_070

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_070 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.3268

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6Q|1|BB|G|24
4V6Q|1|BB|U|25
4V6Q|1|BB|G|26
4V6Q|1|BB|G|27
4V6Q|1|BB|A|28
4V6Q|1|BB|U|29
4V6Q|1|BB|G|30
*
4V6Q|1|BB|C|510
4V6Q|1|BB|U|511
4V6Q|1|BB|G|512
4V6Q|1|BB|A|513
4V6Q|1|BB|A|514
4V6Q|1|BB|A|515
4V6Q|1|BB|C|516

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BS

50S ribosomal protein L20

Chain BU

50S ribosomal protein L22