IL_4V6Q_074

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_074 not in the Motif Atlas

Geometric match to IL_7RQB_006

Geometric discrepancy: 0.1514

The information below is about IL_7RQB_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

4V6Q|1|BB|G|188
4V6Q|1|BB|G|189
4V6Q|1|BB|A|190
4V6Q|1|BB|A|191
4V6Q|1|BB|C|192
4V6Q|1|BB|U|193
4V6Q|1|BB|G|194
*
4V6Q|1|BB|C|201
4V6Q|1|BB|U|202
4V6Q|1|BB|A|203
4V6Q|1|BB|A|204
4V6Q|1|BB|G|205
4V6Q|1|BB|U|206
4V6Q|1|BB|A|207
4V6Q|1|BB|C|208

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BN

50S ribosomal protein L15

Chain BZ

50S ribosomal protein L28