IL_4V6Q_076

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CAG*CGAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_076 not in the Motif Atlas

Homologous match to IL_5J7L_252

Geometric discrepancy: 0.4954

The information below is about IL_5J7L_252

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47972.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V6Q|1|BB|C|269
4V6Q|1|BB|A|270
4V6Q|1|BB|G|271
*
4V6Q|1|BB|C|366
4V6Q|1|BB|G|367
4V6Q|1|BB|A|368
4V6Q|1|BB|U|369
4V6Q|1|BB|G|370

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9