IL_4V6Q_099

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGGU*ACUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|G|881
4V6Q|1|BB|G|882
4V6Q|1|BB|G|883
4V6Q|1|BB|U|884
*
4V6Q|1|BB|A|892
4V6Q|1|BB|C|893
4V6Q|1|BB|U|894
4V6Q|1|BB|U|895

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AB

Transfer RNA; tRNA