IL_4V6Q_102

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

4V6Q|1|BB|A|1009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_102 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2199

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V6Q|1|BB|U|1004
4V6Q|1|BB|C|1005
4V6Q|1|BB|C|1006
4V6Q|1|BB|C|1007
4V6Q|1|BB|A|1008
4V6Q|1|BB|A|1009
4V6Q|1|BB|A|1010
4V6Q|1|BB|G|1011
*
4V6Q|1|BB|C|1150
4V6Q|1|BB|A|1151

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L13

Chain BS

50S ribosomal protein L20