3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GUC*GC
Length
5 nucleotides
Bulged bases
4V6Q|1|BB|U|1012
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6Q_103 not in the Motif Atlas
Homologous match to IL_5J7L_279
Geometric discrepancy: 0.2739
The information below is about IL_5J7L_279
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

4V6Q|1|BB|G|1011
4V6Q|1|BB|U|1012
4V6Q|1|BB|C|1013
*
4V6Q|1|BB|G|1149
4V6Q|1|BB|C|1150

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain BL
50S ribosomal protein L13
Chain BS
50S ribosomal protein L20

Coloring options:


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