3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
4V6Q|1|BB|A|1127, 4V6Q|1|BB|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6Q_105 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.3124
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

4V6Q|1|BB|G|1024
4V6Q|1|BB|G|1025
4V6Q|1|BB|G|1026
4V6Q|1|BB|A|1027
4V6Q|1|BB|A|1028
4V6Q|1|BB|A|1029
4V6Q|1|BB|C|1030
*
4V6Q|1|BB|G|1124
4V6Q|1|BB|G|1125
4V6Q|1|BB|A|1126
4V6Q|1|BB|A|1127
4V6Q|1|BB|G|1128
4V6Q|1|BB|A|1129
4V6Q|1|BB|U|1130
4V6Q|1|BB|G|1131
4V6Q|1|BB|U|1132
4V6Q|1|BB|A|1133
4V6Q|1|BB|A|1134
4V6Q|1|BB|C|1135
4V6Q|1|BB|G|1136
4V6Q|1|BB|G|1137
4V6Q|1|BB|G|1138
4V6Q|1|BB|G|1139
4V6Q|1|BB|C|1140

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B7
50S ribosomal protein L36
Chain BE
50S ribosomal protein L3
Chain BL
50S ribosomal protein L13
Chain BO
50S ribosomal protein L16

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2669 s