3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6Q_114 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.2207
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4V6Q|1|BB|A|1262
4V6Q|1|BB|U|1263
4V6Q|1|BB|A|1264
4V6Q|1|BB|A|1265
4V6Q|1|BB|G|1266
4V6Q|1|BB|U|1267
4V6Q|1|BB|A|1268
4V6Q|1|BB|A|1269
*
4V6Q|1|BB|U|2011
4V6Q|1|BB|G|2012
4V6Q|1|BB|A|2013
4V6Q|1|BB|A|2014
4V6Q|1|BB|A|2015
4V6Q|1|BB|U|2016
4V6Q|1|BB|U|2017

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B3
50S ribosomal protein L32
Chain BF
50S ribosomal protein L4
Chain BU
50S ribosomal protein L22

Coloring options:


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