IL_4V6Q_118

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_118 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.2462

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

4V6Q|1|BB|C|1357
4V6Q|1|BB|G|1358
4V6Q|1|BB|A|1359
4V6Q|1|BB|G|1360
4V6Q|1|BB|G|1361
*
4V6Q|1|BB|C|1370
4V6Q|1|BB|G|1371
4V6Q|1|BB|U|1372
4V6Q|1|BB|A|1373
4V6Q|1|BB|G|1374

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BZ

50S ribosomal protein L28