IL_4V6Q_142

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGG*CUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_142 not in the Motif Atlas

Geometric match to IL_5TBW_047

Geometric discrepancy: 0.2393

The information below is about IL_5TBW_047

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_52767.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

28

Unit IDs

4V6Q|1|BB|G|1861
4V6Q|1|BB|G|1862
4V6Q|1|BB|G|1863
*
4V6Q|1|BB|C|1879
4V6Q|1|BB|U|1880
4V6Q|1|BB|C|1881

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L1