3D structure

PDB id
4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CUGAAG*CGUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6Q_172 not in the Motif Atlas
Homologous match to IL_5J7L_351
Geometric discrepancy: 0.239
The information below is about IL_5J7L_351
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_29471.1
Basepair signature
cWW-cWW-L-tHS-L-cWW
Number of instances in this motif group
1

Unit IDs

4V6Q|1|BB|C|2806
4V6Q|1|BB|U|2807
4V6Q|1|BB|G|2808
4V6Q|1|BB|A|2809
4V6Q|1|BB|A|2810
4V6Q|1|BB|G|2811
*
4V6Q|1|BB|C|2889
4V6Q|1|BB|G|2890
4V6Q|1|BB|U|2891
4V6Q|1|BB|G|2892

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B3
50S ribosomal protein L32
Chain BE
50S ribosomal protein L3
Chain BU
50S ribosomal protein L22

Coloring options:


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