IL_4V6Q_187

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CCG(4OC)CC*G(UR3)AACAAG

Length

14 nucleotides

Bulged bases

4V6Q|1|AA|C|1400, 4V6Q|1|AA|A|1503

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|AA|C|1399
4V6Q|1|AA|C|1400
4V6Q|1|AA|G|1401
4V6Q|1|AA|4OC|1402
4V6Q|1|AA|C|1403
4V6Q|1|AA|C|1404
*
4V6Q|1|AA|G|1497
4V6Q|1|AA|UR3|1498
4V6Q|1|AA|A|1499
4V6Q|1|AA|A|1500
4V6Q|1|AA|C|1501
4V6Q|1|AA|A|1502
4V6Q|1|AA|A|1503
4V6Q|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

mRNA

Chain AD

Transfer RNA; tRNA

Chain AH

30S ribosomal protein S5

Chain AJ

30S ribosomal protein S7

Chain AN

30S ribosomal protein S11

Chain BB

Large subunit ribosomal RNA; LSU rRNA