IL_4V6Q_196

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

AGC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_196 not in the Motif Atlas

Homologous match to IL_4WF9_043

Geometric discrepancy: 0.4068

The information below is about IL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|A|1165
4V6Q|1|BB|G|1166
4V6Q|1|BB|C|1167
*
4V6Q|1|BB|G|1182
4V6Q|1|BB|U|1183
4V6Q|1|BB|U|1184

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B1

50S ribosomal protein L30

Chain BT

50S ribosomal protein L21