IL_4V6Q_205

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UAGC*GUGGG

Length

9 nucleotides

Bulged bases

4V6Q|1|BB|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_205 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3227

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96332.5

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4V6Q|1|BB|U|2081
4V6Q|1|BB|A|2082
4V6Q|1|BB|G|2083
4V6Q|1|BB|C|2084
*
4V6Q|1|BB|G|2235
4V6Q|1|BB|U|2236
4V6Q|1|BB|G|2237
4V6Q|1|BB|G|2238
4V6Q|1|BB|G|2239

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain BD

50S ribosomal protein L2

Chain BZ

50S ribosomal protein L28