IL_4V6Q_208

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUAC

Length

33 nucleotides

Bulged bases

4V6Q|1|BB|C|2129, 4V6Q|1|BB|U|2130, 4V6Q|1|BB|U|2131, 4V6Q|1|BB|G|2157

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|G|2124
4V6Q|1|BB|G|2125
4V6Q|1|BB|A|2126
4V6Q|1|BB|G|2127
4V6Q|1|BB|G|2128
4V6Q|1|BB|C|2129
4V6Q|1|BB|U|2130
4V6Q|1|BB|U|2131
4V6Q|1|BB|U|2132
4V6Q|1|BB|G|2133
4V6Q|1|BB|A|2134
4V6Q|1|BB|A|2135
4V6Q|1|BB|G|2136
*
4V6Q|1|BB|U|2155
4V6Q|1|BB|G|2156
4V6Q|1|BB|G|2157
4V6Q|1|BB|A|2158
4V6Q|1|BB|G|2159
4V6Q|1|BB|C|2160
4V6Q|1|BB|C|2161
4V6Q|1|BB|G|2162
4V6Q|1|BB|A|2163
4V6Q|1|BB|C|2164
4V6Q|1|BB|C|2165
4V6Q|1|BB|U|2166
4V6Q|1|BB|U|2167
4V6Q|1|BB|G|2168
4V6Q|1|BB|A|2169
4V6Q|1|BB|A|2170
4V6Q|1|BB|A|2171
4V6Q|1|BB|U|2172
4V6Q|1|BB|A|2173
4V6Q|1|BB|C|2174

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1