IL_4V6Q_227

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GUGUAGGAUAGGUG*CACCC

Length

19 nucleotides

Bulged bases

4V6Q|1|BB|U|2111, 4V6Q|1|BB|G|2112, 4V6Q|1|BB|U|2118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6Q|1|BB|G|2110
4V6Q|1|BB|U|2111
4V6Q|1|BB|G|2112
4V6Q|1|BB|U|2113
4V6Q|1|BB|A|2114
4V6Q|1|BB|G|2115
4V6Q|1|BB|G|2116
4V6Q|1|BB|A|2117
4V6Q|1|BB|U|2118
4V6Q|1|BB|A|2119
4V6Q|1|BB|G|2120
4V6Q|1|BB|G|2121
4V6Q|1|BB|U|2122
4V6Q|1|BB|G|2123
*
4V6Q|1|BB|C|2175
4V6Q|1|BB|A|2176
4V6Q|1|BB|C|2177
4V6Q|1|BB|C|2178
4V6Q|1|BB|C|2179

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain AD

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L1