IL_4V6Q_230

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Q_230 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.2561

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V6Q|1|BB|C|2815
4V6Q|1|BB|G|2816
4V6Q|1|BB|U|2817
*
4V6Q|1|BB|A|2829
4V6Q|1|BB|C|2830
4V6Q|1|BB|G|2831

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BE

50S ribosomal protein L3

Chain BP

50S ribosomal protein L17