IL_4V6R_044

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

4V6R|1|AA|A|994

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_044 not in the Motif Atlas

Homologous match to IL_4LFB_039

Geometric discrepancy: 0.3557

The information below is about IL_4LFB_039

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_61370.1

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V6R|1|AA|G|993
4V6R|1|AA|A|994
4V6R|1|AA|C|995
4V6R|1|AA|A|996
4V6R|1|AA|U|997
*
4V6R|1|AA|A|1044
4V6R|1|AA|C|1045

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AF

30S ribosomal protein S3

Chain AQ

30S ribosomal protein S14