IL_4V6R_056

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6R_056 not in the Motif Atlas

Homologous match to IL_6CZR_164

Geometric discrepancy: 0.3202

The information below is about IL_6CZR_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6R|1|AA|C|1303
4V6R|1|AA|G|1304
4V6R|1|AA|G|1305
4V6R|1|AA|A|1306
4V6R|1|AA|U|1307
4V6R|1|AA|U|1308
*
4V6R|1|AA|A|1329
4V6R|1|AA|U|1330
4V6R|1|AA|G|1331
4V6R|1|AA|A|1332
4V6R|1|AA|A|1333
4V6R|1|AA|G|1334

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S13

Chain AV

30S ribosomal protein S19