3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6R_076 not in the Motif Atlas
Geometric match to IL_7RQB_006
Geometric discrepancy: 0.1791
The information below is about IL_7RQB_006
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.7
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

4V6R|1|BB|G|188
4V6R|1|BB|G|189
4V6R|1|BB|A|190
4V6R|1|BB|A|191
4V6R|1|BB|C|192
4V6R|1|BB|U|193
4V6R|1|BB|G|194
*
4V6R|1|BB|C|201
4V6R|1|BB|U|202
4V6R|1|BB|A|203
4V6R|1|BB|A|204
4V6R|1|BB|G|205
4V6R|1|BB|U|206
4V6R|1|BB|A|207
4V6R|1|BB|C|208

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B6
50S ribosomal protein L35
Chain BN
50S ribosomal protein L15
Chain BZ
50S ribosomal protein L28

Coloring options:


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