IL_4V6R_101
3D structure
- PDB id
- 4V6R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- GGUCCCAAAG*CACC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6R_101 not in the Motif Atlas
- Geometric match to IL_1MFQ_004
- Geometric discrepancy: 0.2188
- The information below is about IL_1MFQ_004
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
4V6R|1|BB|G|1002
4V6R|1|BB|G|1003
4V6R|1|BB|U|1004
4V6R|1|BB|C|1005
4V6R|1|BB|C|1006
4V6R|1|BB|C|1007
4V6R|1|BB|A|1008
4V6R|1|BB|A|1009
4V6R|1|BB|A|1010
4V6R|1|BB|G|1011
*
4V6R|1|BB|C|1150
4V6R|1|BB|A|1151
4V6R|1|BB|C|1152
4V6R|1|BB|C|1153
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain B1
- 50S ribosomal protein L30
- Chain BA
- 5S ribosomal RNA; 5S rRNA
- Chain BL
- 50S ribosomal protein L13
- Chain BS
- 50S ribosomal protein L20
Coloring options: