3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
GGUCCCAAAG*CACC
Length
14 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6R_101 not in the Motif Atlas
Geometric match to IL_1MFQ_004
Geometric discrepancy: 0.2188
The information below is about IL_1MFQ_004
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_15225.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

4V6R|1|BB|G|1002
4V6R|1|BB|G|1003
4V6R|1|BB|U|1004
4V6R|1|BB|C|1005
4V6R|1|BB|C|1006
4V6R|1|BB|C|1007
4V6R|1|BB|A|1008
4V6R|1|BB|A|1009
4V6R|1|BB|A|1010
4V6R|1|BB|G|1011
*
4V6R|1|BB|C|1150
4V6R|1|BB|A|1151
4V6R|1|BB|C|1152
4V6R|1|BB|C|1153

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B1
50S ribosomal protein L30
Chain BA
5S ribosomal RNA; 5S rRNA
Chain BL
50S ribosomal protein L13
Chain BS
50S ribosomal protein L20

Coloring options:


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