IL_4V6R_107

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GCCCAGACAG*UCGAGU

Length

16 nucleotides

Bulged bases

4V6R|1|BB|A|1046

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6R|1|BB|G|1042
4V6R|1|BB|C|1043
4V6R|1|BB|C|1044
4V6R|1|BB|C|1045
4V6R|1|BB|A|1046
4V6R|1|BB|G|1047
4V6R|1|BB|A|1048
4V6R|1|BB|C|1049
4V6R|1|BB|A|1050
4V6R|1|BB|G|1051
*
4V6R|1|BB|U|1108
4V6R|1|BB|C|1109
4V6R|1|BB|G|1110
4V6R|1|BB|A|1111
4V6R|1|BB|G|1112
4V6R|1|BB|U|1113

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L10

Chain BX

50S ribosomal protein L25