3D structure

PDB id
4V6R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)
Experimental method
ELECTRON MICROSCOPY
Resolution
11.5 Å

Loop

Sequence
CGAGG*CGUAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V6R_115 not in the Motif Atlas
Homologous match to IL_5J7L_293
Geometric discrepancy: 0.276
The information below is about IL_5J7L_293
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_17136.7
Basepair signature
cWW-tSH-tHW-tHS-cWW
Number of instances in this motif group
14

Unit IDs

4V6R|1|BB|C|1357
4V6R|1|BB|G|1358
4V6R|1|BB|A|1359
4V6R|1|BB|G|1360
4V6R|1|BB|G|1361
*
4V6R|1|BB|C|1370
4V6R|1|BB|G|1371
4V6R|1|BB|U|1372
4V6R|1|BB|A|1373
4V6R|1|BB|G|1374

Current chains

Chain BB
23S ribomosomal RNA

Nearby chains

Chain B5
50S ribosomal protein L34
Chain BD
50S ribosomal protein L2
Chain BZ
50S ribosomal protein L28

Coloring options:


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